Coexpression cluster: Cluster_4 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901566 organonitrogen compound biosynthetic process 42.11% (32/76) 4.81 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 42.11% (32/76) 4.58 0.0 0.0
GO:0005840 ribosome 34.21% (26/76) 5.42 0.0 0.0
GO:0003735 structural constituent of ribosome 34.21% (26/76) 5.39 0.0 0.0
GO:0043043 peptide biosynthetic process 34.21% (26/76) 5.38 0.0 0.0
GO:0006518 peptide metabolic process 34.21% (26/76) 5.34 0.0 0.0
GO:0043604 amide biosynthetic process 34.21% (26/76) 5.32 0.0 0.0
GO:0043603 cellular amide metabolic process 34.21% (26/76) 5.25 0.0 0.0
GO:0005198 structural molecule activity 34.21% (26/76) 5.23 0.0 0.0
GO:1990904 ribonucleoprotein complex 34.21% (26/76) 5.2 0.0 0.0
GO:0043228 non-membrane-bounded organelle 34.21% (26/76) 5.18 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 34.21% (26/76) 5.18 0.0 0.0
GO:0006412 translation 32.89% (25/76) 5.36 0.0 0.0
GO:0044249 cellular biosynthetic process 42.11% (32/76) 4.08 0.0 0.0
GO:1901576 organic substance biosynthetic process 42.11% (32/76) 4.0 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 34.21% (26/76) 4.7 0.0 0.0
GO:0009058 biosynthetic process 42.11% (32/76) 3.86 0.0 0.0
GO:0009059 macromolecule biosynthetic process 34.21% (26/76) 4.56 0.0 0.0
GO:0043229 intracellular organelle 34.21% (26/76) 4.45 0.0 0.0
GO:0043226 organelle 34.21% (26/76) 4.45 0.0 0.0
GO:0044444 cytoplasmic part 34.21% (26/76) 4.44 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 42.11% (32/76) 3.56 0.0 0.0
GO:0032991 protein-containing complex 35.53% (27/76) 3.78 0.0 0.0
GO:0044424 intracellular part 36.84% (28/76) 3.39 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 42.11% (32/76) 2.91 0.0 0.0
GO:0044464 cell part 36.84% (28/76) 3.26 0.0 0.0
GO:0009987 cellular process 51.32% (39/76) 2.41 0.0 0.0
GO:0044237 cellular metabolic process 47.37% (36/76) 2.54 0.0 0.0
GO:0044267 cellular protein metabolic process 32.89% (25/76) 3.21 0.0 0.0
GO:0006807 nitrogen compound metabolic process 42.11% (32/76) 2.49 0.0 0.0
GO:0019538 protein metabolic process 32.89% (25/76) 2.92 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 34.21% (26/76) 2.77 0.0 0.0
GO:0071704 organic substance metabolic process 43.42% (33/76) 2.15 0.0 0.0
GO:0005575 cellular_component 39.47% (30/76) 2.32 0.0 0.0
GO:0043170 macromolecule metabolic process 34.21% (26/76) 2.35 0.0 0.0
GO:0008152 metabolic process 47.37% (36/76) 1.71 0.0 0.0
GO:0008150 biological_process 52.63% (40/76) 1.36 0.0 0.0
GO:0033014 tetrapyrrole biosynthetic process 6.58% (5/76) 6.51 0.0 0.0
GO:0003674 molecular_function 64.47% (49/76) 1.0 0.0 0.0
GO:0044238 primary metabolic process 32.89% (25/76) 1.83 0.0 0.0
GO:0033013 tetrapyrrole metabolic process 6.58% (5/76) 6.0 0.0 0.0
GO:0006779 porphyrin-containing compound biosynthetic process 3.95% (3/76) 6.78 2e-06 1e-05
GO:0003723 RNA binding 9.21% (7/76) 3.23 1e-05 4.7e-05
GO:0006778 porphyrin-containing compound metabolic process 3.95% (3/76) 5.88 1.6e-05 7.5e-05
GO:0019843 rRNA binding 3.95% (3/76) 5.78 2e-05 9.3e-05
GO:0051188 cofactor biosynthetic process 5.26% (4/76) 4.19 6.8e-05 0.000304
GO:0006457 protein folding 3.95% (3/76) 5.19 7.3e-05 0.000318
GO:0019438 aromatic compound biosynthetic process 7.89% (6/76) 3.08 7.7e-05 0.000328
GO:0018130 heterocycle biosynthetic process 7.89% (6/76) 3.04 8.9e-05 0.000373
GO:1901362 organic cyclic compound biosynthetic process 7.89% (6/76) 2.94 0.000133 0.000545
GO:0051186 cofactor metabolic process 5.26% (4/76) 3.73 0.000236 0.000949
GO:0016836 hydro-lyase activity 2.63% (2/76) 5.09 0.001535 0.006053
GO:0015995 chlorophyll biosynthetic process 1.32% (1/76) 8.0 0.003913 0.014325
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.32% (1/76) 8.0 0.003913 0.014325
GO:0004655 porphobilinogen synthase activity 1.32% (1/76) 8.0 0.003913 0.014325
GO:0004418 hydroxymethylbilane synthase activity 1.32% (1/76) 8.0 0.003913 0.014325
GO:0003924 GTPase activity 3.95% (3/76) 3.16 0.004669 0.016793
GO:0016829 lyase activity 3.95% (3/76) 3.07 0.005466 0.01932
GO:0042803 protein homodimerization activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0000774 adenyl-nucleotide exchange factor activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0032977 membrane insertase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0046146 tetrahydrobiopterin metabolic process 1.32% (1/76) 7.0 0.007811 0.02164
GO:0004109 coproporphyrinogen oxidase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0008565 protein transporter activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0034312 diol biosynthetic process 1.32% (1/76) 7.0 0.007811 0.02164
GO:0006729 tetrahydrobiopterin biosynthetic process 1.32% (1/76) 7.0 0.007811 0.02164
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0034311 diol metabolic process 1.32% (1/76) 7.0 0.007811 0.02164
GO:0004784 superoxide dismutase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 1.32% (1/76) 7.0 0.007811 0.02164
GO:0004751 ribose-5-phosphate isomerase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0009052 pentose-phosphate shunt, non-oxidative branch 1.32% (1/76) 7.0 0.007811 0.02164
GO:0004853 uroporphyrinogen decarboxylase activity 1.32% (1/76) 7.0 0.007811 0.02164
GO:0016835 carbon-oxygen lyase activity 2.63% (2/76) 3.79 0.009212 0.025179
GO:1901363 heterocyclic compound binding 19.74% (15/76) 0.94 0.009653 0.025701
GO:0097159 organic cyclic compound binding 19.74% (15/76) 0.94 0.009653 0.025701
GO:0015979 photosynthesis 2.63% (2/76) 3.71 0.010198 0.026802
GO:0003676 nucleic acid binding 10.53% (8/76) 1.48 0.0078 0.027103
GO:0001882 nucleoside binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0005525 GTP binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0032561 guanyl ribonucleotide binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0032550 purine ribonucleoside binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0032549 ribonucleoside binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0001883 purine nucleoside binding 3.95% (3/76) 2.65 0.012188 0.029395
GO:0042802 identical protein binding 1.32% (1/76) 6.41 0.011695 0.030347
GO:0019001 guanyl nucleotide binding 3.95% (3/76) 2.63 0.012732 0.030349
GO:0010207 photosystem II assembly 1.32% (1/76) 6.0 0.015563 0.035059
GO:0046173 polyol biosynthetic process 1.32% (1/76) 6.0 0.015563 0.035059
GO:0042559 pteridine-containing compound biosynthetic process 1.32% (1/76) 6.0 0.015563 0.035059
GO:0046148 pigment biosynthetic process 1.32% (1/76) 6.0 0.015563 0.035059
GO:0046165 alcohol biosynthetic process 1.32% (1/76) 6.0 0.015563 0.035059
GO:0046483 heterocycle metabolic process 7.89% (6/76) 1.55 0.016703 0.037218
GO:0006725 cellular aromatic compound metabolic process 7.89% (6/76) 1.54 0.016987 0.037445
GO:0019682 glyceraldehyde-3-phosphate metabolic process 1.32% (1/76) 5.68 0.019416 0.039408
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 1.32% (1/76) 5.68 0.019416 0.039408
GO:0009507 chloroplast 1.32% (1/76) 5.68 0.019416 0.039408
GO:0060590 ATPase regulator activity 1.32% (1/76) 5.68 0.019416 0.039408
GO:0009536 plastid 1.32% (1/76) 5.68 0.019416 0.039408
GO:0072593 reactive oxygen species metabolic process 1.32% (1/76) 5.68 0.019416 0.039408
GO:0006801 superoxide metabolic process 1.32% (1/76) 5.68 0.019416 0.039408
GO:1901360 organic cyclic compound metabolic process 7.89% (6/76) 1.5 0.019228 0.041934
GO:0016769 transferase activity, transferring nitrogenous groups 1.32% (1/76) 5.41 0.023254 0.045838
GO:0015994 chlorophyll metabolic process 1.32% (1/76) 5.41 0.023254 0.045838
GO:0008483 transaminase activity 1.32% (1/76) 5.41 0.023254 0.045838
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_34 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.031 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_43 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.169 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_106 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.11 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_256 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_119 0.047 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.056 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.066 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_225 0.056 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_239 0.073 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_251 0.04 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_261 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_2 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.041 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_167 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_184 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.137 Archaeplastida Compare
Gingko biloba HCCA Cluster_133 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.197 Archaeplastida Compare
Zea mays HCCA Cluster_133 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_146 0.031 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_268 0.078 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.15 Archaeplastida Compare
Zea mays HCCA Cluster_362 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.028 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_53 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.057 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.328 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_124 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_160 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_224 0.077 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_260 0.046 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.039 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.041 Archaeplastida Compare
Picea abies HCCA Cluster_27 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_53 0.031 Archaeplastida Compare
Picea abies HCCA Cluster_88 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.037 Archaeplastida Compare
Picea abies HCCA Cluster_227 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_266 0.121 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.059 Archaeplastida Compare
Picea abies HCCA Cluster_324 0.038 Archaeplastida Compare
Picea abies HCCA Cluster_451 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.038 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.109 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.149 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_148 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_321 0.027 Archaeplastida Compare
Oryza sativa HCCA Cluster_331 0.033 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_25 0.032 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.055 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.078 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_147 0.067 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_186 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.229 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.07 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_42 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.076 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.089 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_245 0.092 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.072 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_89 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.28 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.053 Archaeplastida Compare
Sequences (76) (download table)

InterPro Domains

GO Terms

Family Terms