Coexpression cluster: Cluster_83 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0015979 photosynthesis 26.58% (21/79) 6.55 0.0 0.0
GO:0044436 thylakoid part 24.05% (19/79) 6.63 0.0 0.0
GO:0098796 membrane protein complex 27.85% (22/79) 5.5 0.0 0.0
GO:0009521 photosystem 21.52% (17/79) 6.61 0.0 0.0
GO:0044425 membrane part 40.51% (32/79) 3.87 0.0 0.0
GO:0005575 cellular_component 53.16% (42/79) 2.65 0.0 0.0
GO:0044424 intracellular part 40.51% (32/79) 3.36 0.0 0.0
GO:0044464 cell part 40.51% (32/79) 3.3 0.0 0.0
GO:0044237 cellular metabolic process 53.16% (42/79) 2.53 0.0 0.0
GO:0008152 metabolic process 64.56% (51/79) 2.08 0.0 0.0
GO:0032991 protein-containing complex 32.91% (26/79) 3.63 0.0 0.0
GO:0009987 cellular process 54.43% (43/79) 2.32 0.0 0.0
GO:0009523 photosystem II 12.66% (10/79) 6.9 0.0 0.0
GO:0008150 biological_process 69.62% (55/79) 1.6 0.0 0.0
GO:0019684 photosynthesis, light reaction 11.39% (9/79) 6.88 0.0 0.0
GO:0009767 photosynthetic electron transport chain 11.39% (9/79) 6.88 0.0 0.0
GO:1902600 proton transmembrane transport 13.92% (11/79) 5.72 0.0 0.0
GO:0009579 thylakoid 11.39% (9/79) 6.6 0.0 0.0
GO:0015672 monovalent inorganic cation transport 13.92% (11/79) 5.37 0.0 0.0
GO:0022900 electron transport chain 11.39% (9/79) 6.22 0.0 0.0
GO:0098662 inorganic cation transmembrane transport 13.92% (11/79) 5.27 0.0 0.0
GO:0098655 cation transmembrane transport 13.92% (11/79) 5.27 0.0 0.0
GO:0098660 inorganic ion transmembrane transport 13.92% (11/79) 5.27 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 8.86% (7/79) 7.39 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 8.86% (7/79) 7.39 0.0 0.0
GO:0009055 electron transfer activity 15.19% (12/79) 4.85 0.0 0.0
GO:0034220 ion transmembrane transport 13.92% (11/79) 5.15 0.0 0.0
GO:0015985 energy coupled proton transport, down electrochemical gradient 10.13% (8/79) 6.5 0.0 0.0
GO:0015986 ATP synthesis coupled proton transport 10.13% (8/79) 6.5 0.0 0.0
GO:0016020 membrane 22.78% (18/79) 3.25 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 11.39% (9/79) 5.31 0.0 0.0
GO:0009539 photosystem II reaction center 6.33% (5/79) 7.9 0.0 0.0
GO:0009142 nucleoside triphosphate biosynthetic process 10.13% (8/79) 5.47 0.0 0.0
GO:0006754 ATP biosynthetic process 10.13% (8/79) 5.47 0.0 0.0
GO:0009201 ribonucleoside triphosphate biosynthetic process 10.13% (8/79) 5.47 0.0 0.0
GO:0009145 purine nucleoside triphosphate biosynthetic process 10.13% (8/79) 5.47 0.0 0.0
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 10.13% (8/79) 5.47 0.0 0.0
GO:0009127 purine nucleoside monophosphate biosynthetic process 10.13% (8/79) 5.41 0.0 0.0
GO:0009124 nucleoside monophosphate biosynthetic process 10.13% (8/79) 5.41 0.0 0.0
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 10.13% (8/79) 5.41 0.0 0.0
GO:0009156 ribonucleoside monophosphate biosynthetic process 10.13% (8/79) 5.41 0.0 0.0
GO:0046390 ribose phosphate biosynthetic process 10.13% (8/79) 5.36 0.0 0.0
GO:0009152 purine ribonucleotide biosynthetic process 10.13% (8/79) 5.36 0.0 0.0
GO:0009260 ribonucleotide biosynthetic process 10.13% (8/79) 5.36 0.0 0.0
GO:0006164 purine nucleotide biosynthetic process 10.13% (8/79) 5.31 0.0 0.0
GO:0006812 cation transport 13.92% (11/79) 4.16 0.0 0.0
GO:0072522 purine-containing compound biosynthetic process 10.13% (8/79) 5.29 0.0 0.0
GO:0046034 ATP metabolic process 10.13% (8/79) 5.29 0.0 0.0
GO:0009199 ribonucleoside triphosphate metabolic process 10.13% (8/79) 5.28 0.0 0.0
GO:0009144 purine nucleoside triphosphate metabolic process 10.13% (8/79) 5.28 0.0 0.0
GO:0009205 purine ribonucleoside triphosphate metabolic process 10.13% (8/79) 5.28 0.0 0.0
GO:0009123 nucleoside monophosphate metabolic process 10.13% (8/79) 5.24 0.0 0.0
GO:0009161 ribonucleoside monophosphate metabolic process 10.13% (8/79) 5.24 0.0 0.0
GO:0009167 purine ribonucleoside monophosphate metabolic process 10.13% (8/79) 5.24 0.0 0.0
GO:0009126 purine nucleoside monophosphate metabolic process 10.13% (8/79) 5.24 0.0 0.0
GO:0009141 nucleoside triphosphate metabolic process 10.13% (8/79) 5.21 0.0 0.0
GO:0009165 nucleotide biosynthetic process 10.13% (8/79) 5.09 0.0 0.0
GO:1901293 nucleoside phosphate biosynthetic process 10.13% (8/79) 5.09 0.0 0.0
GO:0016021 integral component of membrane 18.99% (15/79) 3.17 0.0 0.0
GO:0009259 ribonucleotide metabolic process 10.13% (8/79) 5.08 0.0 0.0
GO:0009150 purine ribonucleotide metabolic process 10.13% (8/79) 5.08 0.0 0.0
GO:0031224 intrinsic component of membrane 18.99% (15/79) 3.14 0.0 0.0
GO:0006163 purine nucleotide metabolic process 10.13% (8/79) 5.04 0.0 0.0
GO:0072521 purine-containing compound metabolic process 10.13% (8/79) 5.02 0.0 0.0
GO:0019693 ribose phosphate metabolic process 10.13% (8/79) 5.0 0.0 0.0
GO:1901137 carbohydrate derivative biosynthetic process 10.13% (8/79) 4.93 0.0 0.0
GO:0016168 chlorophyll binding 6.33% (5/79) 6.99 0.0 0.0
GO:0009117 nucleotide metabolic process 10.13% (8/79) 4.82 0.0 0.0
GO:0006753 nucleoside phosphate metabolic process 10.13% (8/79) 4.78 0.0 0.0
GO:0006811 ion transport 13.92% (11/79) 3.7 0.0 0.0
GO:0090407 organophosphate biosynthetic process 10.13% (8/79) 4.63 0.0 0.0
GO:0055086 nucleobase-containing small molecule metabolic process 10.13% (8/79) 4.56 0.0 0.0
GO:0017144 drug metabolic process 10.13% (8/79) 4.5 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 15.19% (12/79) 3.26 0.0 0.0
GO:0055114 oxidation-reduction process 21.52% (17/79) 2.44 0.0 0.0
GO:1901135 carbohydrate derivative metabolic process 10.13% (8/79) 4.24 0.0 0.0
GO:0031361 integral component of thylakoid membrane 3.8% (3/79) 8.75 0.0 0.0
GO:0031360 intrinsic component of thylakoid membrane 3.8% (3/79) 8.75 0.0 0.0
GO:0019637 organophosphate metabolic process 10.13% (8/79) 4.12 0.0 0.0
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 6.33% (5/79) 5.79 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 15.19% (12/79) 3.0 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 10.13% (8/79) 3.77 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 10.13% (8/79) 3.53 0.0 1e-06
GO:0018130 heterocycle biosynthetic process 10.13% (8/79) 3.53 0.0 1e-06
GO:0044249 cellular biosynthetic process 15.19% (12/79) 2.54 1e-06 2e-06
GO:1901362 organic cyclic compound biosynthetic process 10.13% (8/79) 3.39 1e-06 2e-06
GO:0016491 oxidoreductase activity 18.99% (15/79) 2.16 1e-06 2e-06
GO:0055085 transmembrane transport 13.92% (11/79) 2.67 1e-06 2e-06
GO:1901576 organic substance biosynthetic process 15.19% (12/79) 2.47 2e-06 3e-06
GO:0046906 tetrapyrrole binding 11.39% (9/79) 2.99 2e-06 4e-06
GO:0015078 proton transmembrane transporter activity 6.33% (5/79) 4.47 3e-06 7e-06
GO:0009058 biosynthetic process 15.19% (12/79) 2.33 4e-06 9e-06
GO:0044281 small molecule metabolic process 10.13% (8/79) 3.06 5e-06 1.1e-05
GO:0034641 cellular nitrogen compound metabolic process 15.19% (12/79) 2.23 9e-06 1.8e-05
GO:0015077 monovalent inorganic cation transmembrane transporter activity 6.33% (5/79) 4.17 9e-06 1.8e-05
GO:0031647 regulation of protein stability 2.53% (2/79) 8.17 1.6e-05 3e-05
GO:0050821 protein stabilization 2.53% (2/79) 8.17 1.6e-05 3e-05
GO:0042301 phosphate ion binding 2.53% (2/79) 8.17 1.6e-05 3e-05
GO:0003954 NADH dehydrogenase activity 3.8% (3/79) 5.88 1.8e-05 3.3e-05
GO:0050136 NADH dehydrogenase (quinone) activity 3.8% (3/79) 5.88 1.8e-05 3.3e-05
GO:0008137 NADH dehydrogenase (ubiquinone) activity 3.8% (3/79) 5.88 1.8e-05 3.3e-05
GO:0048037 cofactor binding 12.66% (10/79) 2.34 2.7e-05 4.8e-05
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 3.8% (3/79) 5.69 2.7e-05 4.8e-05
GO:0022890 inorganic cation transmembrane transporter activity 6.33% (5/79) 3.62 5.7e-05 0.000103
GO:0006810 transport 13.92% (11/79) 2.07 5.9e-05 0.000105
GO:0051234 establishment of localization 13.92% (11/79) 2.06 6.1e-05 0.000107
GO:0043167 ion binding 25.32% (20/79) 1.35 6.4e-05 0.000112
GO:0051179 localization 13.92% (11/79) 2.04 6.9e-05 0.000119
GO:0008324 cation transmembrane transporter activity 6.33% (5/79) 3.45 9.8e-05 0.000167
GO:0006139 nucleobase-containing compound metabolic process 10.13% (8/79) 2.33 0.000194 0.000328
GO:0015318 inorganic molecular entity transmembrane transporter activity 6.33% (5/79) 3.11 0.00029 0.000482
GO:0016651 oxidoreductase activity, acting on NAD(P)H 3.8% (3/79) 4.56 0.000288 0.000483
GO:0046483 heterocycle metabolic process 10.13% (8/79) 2.21 0.000344 0.000566
GO:0006725 cellular aromatic compound metabolic process 10.13% (8/79) 2.19 0.000362 0.000591
GO:1901360 organic cyclic compound metabolic process 10.13% (8/79) 2.16 0.000431 0.000697
GO:0015075 ion transmembrane transporter activity 6.33% (5/79) 2.98 0.000442 0.000709
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 2.53% (2/79) 5.75 0.000624 0.000991
GO:0009522 photosystem I 2.53% (2/79) 5.29 0.00119 0.001875
GO:0043168 anion binding 16.46% (13/79) 1.39 0.001251 0.001955
GO:0003674 molecular_function 50.63% (40/79) 0.52 0.003682 0.005707
GO:0016984 ribulose-bisphosphate carboxylase activity 1.27% (1/79) 7.17 0.006939 0.010667
GO:0005840 ribosome 5.06% (4/79) 2.36 0.007733 0.01179
GO:0065008 regulation of biological quality 2.53% (2/79) 3.89 0.008066 0.012197
GO:0006412 translation 5.06% (4/79) 2.33 0.00847 0.012705
GO:0043043 peptide biosynthetic process 5.06% (4/79) 2.31 0.008811 0.012905
GO:1901564 organonitrogen compound metabolic process 15.19% (12/79) 1.11 0.008765 0.012939
GO:0003735 structural constituent of ribosome 5.06% (4/79) 2.31 0.008725 0.012983
GO:0043604 amide biosynthetic process 5.06% (4/79) 2.28 0.00943 0.013703
GO:0006518 peptide metabolic process 5.06% (4/79) 2.28 0.009521 0.013728
GO:0006793 phosphorus metabolic process 10.13% (8/79) 1.42 0.010067 0.014294
GO:0006796 phosphate-containing compound metabolic process 10.13% (8/79) 1.42 0.010067 0.014294
GO:0043228 non-membrane-bounded organelle 5.06% (4/79) 2.23 0.010654 0.014788
GO:0043232 intracellular non-membrane-bounded organelle 5.06% (4/79) 2.23 0.010654 0.014788
GO:0043603 cellular amide metabolic process 5.06% (4/79) 2.23 0.010556 0.014875
GO:1990904 ribonucleoprotein complex 5.06% (4/79) 2.21 0.011151 0.015363
GO:0005198 structural molecule activity 5.06% (4/79) 2.21 0.011252 0.015388
GO:0015977 carbon fixation 1.27% (1/79) 5.58 0.020676 0.028071
GO:0022857 transmembrane transporter activity 6.33% (5/79) 1.62 0.023926 0.032016
GO:0020037 heme binding 5.06% (4/79) 1.88 0.023868 0.03217
GO:0005215 transporter activity 6.33% (5/79) 1.59 0.025496 0.033873
GO:0046872 metal ion binding 8.86% (7/79) 1.21 0.03145 0.041487
GO:0043169 cation binding 8.86% (7/79) 1.21 0.0319 0.041785
GO:0017004 cytochrome complex assembly 1.27% (1/79) 4.85 0.034224 0.044516
GO:0034645 cellular macromolecule biosynthetic process 5.06% (4/79) 1.7 0.035289 0.045582
GO:0006807 nitrogen compound metabolic process 15.19% (12/79) 0.83 0.035553 0.045606
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_2 0.037 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_61 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_107 0.472 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_92 0.182 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_151 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_199 0.054 Archaeplastida Compare
Gingko biloba HCCA Cluster_30 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_78 0.147 Archaeplastida Compare
Gingko biloba HCCA Cluster_89 0.053 Archaeplastida Compare
Gingko biloba HCCA Cluster_297 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_44 0.05 Archaeplastida Compare
Zea mays HCCA Cluster_83 0.038 Archaeplastida Compare
Zea mays HCCA Cluster_93 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_109 0.069 Archaeplastida Compare
Zea mays HCCA Cluster_149 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_160 0.152 Archaeplastida Compare
Zea mays HCCA Cluster_209 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_246 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_255 0.073 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_8 0.117 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_298 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_9 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_82 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_236 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_54 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_4 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_125 0.412 Archaeplastida Compare
Oryza sativa HCCA Cluster_233 0.06 Archaeplastida Compare
Oryza sativa HCCA Cluster_238 0.027 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_27 0.257 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_1 0.046 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_3 0.076 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_4 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_5 0.173 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_16 0.049 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_18 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_24 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_34 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.048 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_93 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_108 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_113 0.053 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_149 0.096 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_172 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_187 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_199 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_287 0.054 Archaeplastida Compare
Vitis vinifera HCCA Cluster_20 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_25 0.071 Archaeplastida Compare
Vitis vinifera HCCA Cluster_71 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_99 0.046 Archaeplastida Compare
Vitis vinifera HCCA Cluster_165 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.019 Archaeplastida Compare
Sequences (79) (download table)

InterPro Domains

GO Terms

Family Terms