Coexpression cluster: Cluster_56 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0097159 organic cyclic compound binding 40.21% (39/97) 2.0 0.0 0.0
GO:1901363 heterocyclic compound binding 40.21% (39/97) 2.0 0.0 0.0
GO:0005488 binding 48.45% (47/97) 1.57 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 19.59% (19/97) 2.96 0.0 0.0
GO:0097367 carbohydrate derivative binding 24.74% (24/97) 2.45 0.0 0.0
GO:0032553 ribonucleotide binding 24.74% (24/97) 2.45 0.0 0.0
GO:0034660 ncRNA metabolic process 9.28% (9/97) 5.11 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 23.71% (23/97) 2.49 0.0 0.0
GO:0003674 molecular_function 60.82% (59/97) 1.1 0.0 0.0
GO:0032555 purine ribonucleotide binding 23.71% (23/97) 2.4 0.0 0.0
GO:0017076 purine nucleotide binding 23.71% (23/97) 2.4 0.0 0.0
GO:1901265 nucleoside phosphate binding 24.74% (24/97) 2.33 0.0 0.0
GO:0000166 nucleotide binding 24.74% (24/97) 2.33 0.0 0.0
GO:0043168 anion binding 24.74% (24/97) 2.29 0.0 0.0
GO:0036094 small molecule binding 24.74% (24/97) 2.27 0.0 0.0
GO:0003676 nucleic acid binding 22.68% (22/97) 2.38 0.0 0.0
GO:0003723 RNA binding 11.34% (11/97) 3.84 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 7.22% (7/97) 5.21 0.0 0.0
GO:0006399 tRNA metabolic process 7.22% (7/97) 5.12 0.0 0.0
GO:0090304 nucleic acid metabolic process 12.37% (12/97) 3.43 0.0 0.0
GO:0043039 tRNA aminoacylation 6.19% (6/97) 5.57 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.19% (6/97) 5.57 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 6.19% (6/97) 5.57 0.0 0.0
GO:0043038 amino acid activation 6.19% (6/97) 5.57 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 8.25% (8/97) 4.47 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 13.4% (13/97) 3.14 0.0 0.0
GO:0016070 RNA metabolic process 10.31% (10/97) 3.61 0.0 0.0
GO:0016874 ligase activity 7.22% (7/97) 4.71 0.0 0.0
GO:0046483 heterocycle metabolic process 13.4% (13/97) 2.95 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 13.4% (13/97) 2.94 0.0 0.0
GO:0005524 ATP binding 18.56% (18/97) 2.31 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 13.4% (13/97) 2.9 0.0 0.0
GO:0008144 drug binding 18.56% (18/97) 2.24 0.0 0.0
GO:0044237 cellular metabolic process 25.77% (25/97) 1.77 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 18.56% (18/97) 2.22 0.0 0.0
GO:0030554 adenyl nucleotide binding 18.56% (18/97) 2.21 0.0 0.0
GO:0006520 cellular amino acid metabolic process 7.22% (7/97) 4.32 0.0 0.0
GO:0043167 ion binding 25.77% (25/97) 1.73 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 5.15% (5/97) 5.42 0.0 1e-06
GO:0009987 cellular process 26.8% (26/97) 1.59 0.0 1e-06
GO:0008135 translation factor activity, RNA binding 5.15% (5/97) 5.0 1e-06 3e-06
GO:0000049 tRNA binding 3.09% (3/97) 7.33 1e-06 4e-06
GO:0043170 macromolecule metabolic process 21.65% (21/97) 1.75 1e-06 5e-06
GO:0034645 cellular macromolecule biosynthetic process 9.28% (9/97) 2.99 2e-06 1.3e-05
GO:0006807 nitrogen compound metabolic process 21.65% (21/97) 1.61 3e-06 2e-05
GO:0009059 macromolecule biosynthetic process 9.28% (9/97) 2.89 4e-06 2.2e-05
GO:0004814 arginine-tRNA ligase activity 2.06% (2/97) 8.74 5e-06 2.8e-05
GO:0006420 arginyl-tRNA aminoacylation 2.06% (2/97) 8.74 5e-06 2.8e-05
GO:0019752 carboxylic acid metabolic process 7.22% (7/97) 3.39 5e-06 2.8e-05
GO:0043436 oxoacid metabolic process 7.22% (7/97) 3.39 5e-06 2.8e-05
GO:0006082 organic acid metabolic process 7.22% (7/97) 3.39 5e-06 2.8e-05
GO:0044249 cellular biosynthetic process 11.34% (11/97) 2.42 7e-06 3.6e-05
GO:0044424 intracellular part 13.4% (13/97) 2.13 8e-06 4.2e-05
GO:0044281 small molecule metabolic process 8.25% (8/97) 2.94 1e-05 5.1e-05
GO:1901576 organic substance biosynthetic process 11.34% (11/97) 2.34 1.2e-05 5.7e-05
GO:0043232 intracellular non-membrane-bounded organelle 7.22% (7/97) 3.19 1.2e-05 5.8e-05
GO:0043228 non-membrane-bounded organelle 7.22% (7/97) 3.19 1.2e-05 5.8e-05
GO:0044464 cell part 13.4% (13/97) 2.07 1.3e-05 5.9e-05
GO:0071704 organic substance metabolic process 23.71% (23/97) 1.4 1.3e-05 5.9e-05
GO:1990904 ribonucleoprotein complex 7.22% (7/97) 3.16 1.4e-05 6.3e-05
GO:0043229 intracellular organelle 9.28% (9/97) 2.63 1.6e-05 6.8e-05
GO:0043226 organelle 9.28% (9/97) 2.63 1.6e-05 6.8e-05
GO:0031369 translation initiation factor binding 2.06% (2/97) 8.16 1.6e-05 7e-05
GO:0009058 biosynthetic process 11.34% (11/97) 2.21 2.7e-05 0.000111
GO:1901566 organonitrogen compound biosynthetic process 8.25% (8/97) 2.65 4.4e-05 0.000177
GO:0044444 cytoplasmic part 8.25% (8/97) 2.61 5.4e-05 0.000216
GO:0044238 primary metabolic process 21.65% (21/97) 1.32 7e-05 0.000272
GO:0005840 ribosome 6.19% (6/97) 3.12 7e-05 0.000275
GO:0044271 cellular nitrogen compound biosynthetic process 8.25% (8/97) 2.51 8.8e-05 0.000337
GO:0003743 translation initiation factor activity 3.09% (3/97) 5.12 9e-05 0.000341
GO:0006412 translation 6.19% (6/97) 3.05 9.3e-05 0.000347
GO:0003735 structural constituent of ribosome 6.19% (6/97) 3.02 0.000102 0.000373
GO:0043043 peptide biosynthetic process 6.19% (6/97) 3.01 0.000109 0.000394
GO:0001882 nucleoside binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0032549 ribonucleoside binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0032550 purine ribonucleoside binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0032561 guanyl ribonucleotide binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0001883 purine nucleoside binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0005525 GTP binding 5.15% (5/97) 3.38 0.000127 0.000418
GO:0043604 amide biosynthetic process 6.19% (6/97) 2.96 0.000131 0.000427
GO:0008152 metabolic process 25.77% (25/97) 1.11 0.000136 0.000438
GO:0019001 guanyl nucleotide binding 5.15% (5/97) 3.35 0.000139 0.000441
GO:0006518 peptide metabolic process 6.19% (6/97) 2.97 0.000125 0.000444
GO:0005198 structural molecule activity 6.19% (6/97) 2.9 0.000161 0.000501
GO:0043603 cellular amide metabolic process 6.19% (6/97) 2.9 0.000161 0.000501
GO:0005852 eukaryotic translation initiation factor 3 complex 2.06% (2/97) 6.57 0.000192 0.000589
GO:0032991 protein-containing complex 9.28% (9/97) 2.15 0.000208 0.00063
GO:0034470 ncRNA processing 3.09% (3/97) 4.47 0.000346 0.001038
GO:0006414 translational elongation 2.06% (2/97) 6.04 0.000413 0.001226
GO:0042254 ribosome biogenesis 2.06% (2/97) 5.84 0.000555 0.001627
GO:0003746 translation elongation factor activity 2.06% (2/97) 5.74 0.000633 0.001836
GO:1901564 organonitrogen compound metabolic process 15.46% (15/97) 1.37 0.00066 0.001893
GO:0022613 ribonucleoprotein complex biogenesis 2.06% (2/97) 5.66 0.000716 0.002033
GO:0006413 translational initiation 2.06% (2/97) 5.22 0.00132 0.003708
GO:0008168 methyltransferase activity 4.12% (4/97) 3.02 0.001572 0.004279
GO:0016072 rRNA metabolic process 2.06% (2/97) 5.1 0.001561 0.004292
GO:0006364 rRNA processing 2.06% (2/97) 5.1 0.001561 0.004292
GO:0008150 biological_process 30.93% (30/97) 0.75 0.001971 0.005256
GO:0016741 transferase activity, transferring one-carbon groups 4.12% (4/97) 2.93 0.001953 0.00526
GO:0044085 cellular component biogenesis 2.06% (2/97) 4.84 0.002246 0.005929
GO:0004826 phenylalanine-tRNA ligase activity 1.03% (1/97) 8.74 0.002333 0.006039
GO:0006432 phenylalanyl-tRNA aminoacylation 1.03% (1/97) 8.74 0.002333 0.006039
GO:0000726 non-recombinational repair 1.03% (1/97) 7.74 0.004661 0.011608
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.03% (1/97) 7.74 0.004661 0.011608
GO:0006303 double-strand break repair via nonhomologous end joining 1.03% (1/97) 7.74 0.004661 0.011608
GO:0044260 cellular macromolecule metabolic process 12.37% (12/97) 1.25 0.004543 0.011645
GO:0006396 RNA processing 3.09% (3/97) 3.15 0.004822 0.011897
GO:0005575 cellular_component 14.43% (14/97) 1.1 0.005521 0.013496
GO:0003924 GTPase activity 3.09% (3/97) 3.02 0.006222 0.01507
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.03% (1/97) 7.16 0.006983 0.016608
GO:0005730 nucleolus 1.03% (1/97) 7.16 0.006983 0.016608
GO:0046451 diaminopimelate metabolic process 1.03% (1/97) 6.74 0.0093 0.021166
GO:0006553 lysine metabolic process 1.03% (1/97) 6.74 0.0093 0.021166
GO:0009085 lysine biosynthetic process 1.03% (1/97) 6.74 0.0093 0.021166
GO:0009089 lysine biosynthetic process via diaminopimelate 1.03% (1/97) 6.74 0.0093 0.021166
GO:0006302 double-strand break repair 1.03% (1/97) 6.74 0.0093 0.021166
GO:0005515 protein binding 11.34% (11/97) 1.16 0.00995 0.022452
GO:0005737 cytoplasm 2.06% (2/97) 3.66 0.011104 0.024842
GO:0006281 DNA repair 2.06% (2/97) 3.61 0.011736 0.026037
GO:0051716 cellular response to stimulus 2.06% (2/97) 3.51 0.013385 0.028963
GO:0033554 cellular response to stress 2.06% (2/97) 3.51 0.013385 0.028963
GO:0006974 cellular response to DNA damage stimulus 2.06% (2/97) 3.51 0.013385 0.028963
GO:0008134 transcription factor binding 1.03% (1/97) 6.16 0.013918 0.029395
GO:0032040 small-subunit processome 1.03% (1/97) 6.16 0.013918 0.029395
GO:0043648 dicarboxylic acid metabolic process 1.03% (1/97) 6.16 0.013918 0.029395
GO:0016423 tRNA (guanine) methyltransferase activity 1.03% (1/97) 5.94 0.016219 0.033982
GO:0017111 nucleoside-triphosphatase activity 4.12% (4/97) 2.02 0.01731 0.035984
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 1.03% (1/97) 5.74 0.018514 0.03789
GO:0008175 tRNA methyltransferase activity 1.03% (1/97) 5.74 0.018514 0.03789
GO:0006220 pyrimidine nucleotide metabolic process 1.03% (1/97) 5.57 0.020805 0.041297
GO:0003883 CTP synthase activity 1.03% (1/97) 5.57 0.020805 0.041297
GO:0006221 pyrimidine nucleotide biosynthetic process 1.03% (1/97) 5.57 0.020805 0.041297
GO:0030684 preribosome 1.03% (1/97) 5.57 0.020805 0.041297
GO:0016462 pyrophosphatase activity 4.12% (4/97) 1.93 0.021183 0.041733
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 4.12% (4/97) 1.91 0.022424 0.043852
GO:0016817 hydrolase activity, acting on acid anhydrides 4.12% (4/97) 1.89 0.023061 0.044766
GO:0071840 cellular component organization or biogenesis 3.09% (3/97) 2.28 0.024103 0.046446
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.073 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.053 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.06 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.065 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_192 0.071 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.028 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_233 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.041 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_74 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_128 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.044 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_190 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.047 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.041 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_253 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_255 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_256 0.023 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_259 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_40 0.038 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_91 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.045 Archaeplastida Compare
Gingko biloba HCCA Cluster_97 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.057 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.032 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.04 Archaeplastida Compare
Gingko biloba HCCA Cluster_309 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_315 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_318 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_335 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_122 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_141 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.035 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.035 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_36 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_84 0.05 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.042 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.07 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.088 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.044 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_84 0.075 Archaeplastida Compare
Picea abies HCCA Cluster_181 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_238 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.033 Archaeplastida Compare
Picea abies HCCA Cluster_364 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.045 Archaeplastida Compare
Picea abies HCCA Cluster_495 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_498 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_531 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.146 Archaeplastida Compare
Oryza sativa HCCA Cluster_140 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_174 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_200 0.038 Archaeplastida Compare
Oryza sativa HCCA Cluster_206 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_316 0.066 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.058 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.052 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.051 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_148 0.047 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_180 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_86 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.115 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.065 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_223 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.038 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_252 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_275 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.071 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.054 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.067 Archaeplastida Compare
Vitis vinifera HCCA Cluster_181 0.04 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.039 Archaeplastida Compare
Vitis vinifera HCCA Cluster_233 0.036 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.03 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_21 0.03 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.041 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_35 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.056 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.078 Archaeplastida Compare
Sequences (97) (download table)

InterPro Domains

GO Terms

Family Terms