Coexpression cluster: Cluster_114 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044281 small molecule metabolic process 21.05% (12/57) 4.29 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 24.56% (14/57) 3.6 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 24.56% (14/57) 3.63 0.0 0.0
GO:0046483 heterocycle metabolic process 24.56% (14/57) 3.65 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 24.56% (14/57) 3.19 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 21.05% (12/57) 3.55 0.0 0.0
GO:0006520 cellular amino acid metabolic process 12.28% (7/57) 5.07 0.0 0.0
GO:0090304 nucleic acid metabolic process 15.79% (9/57) 3.5 0.0 3e-06
GO:0006082 organic acid metabolic process 12.28% (7/57) 4.16 0.0 3e-06
GO:0043436 oxoacid metabolic process 12.28% (7/57) 4.16 0.0 3e-06
GO:0019752 carboxylic acid metabolic process 12.28% (7/57) 4.16 0.0 3e-06
GO:0044237 cellular metabolic process 31.58% (18/57) 1.9 1e-06 1.2e-05
GO:0009987 cellular process 33.33% (19/57) 1.78 1e-06 1.6e-05
GO:0016070 RNA metabolic process 12.28% (7/57) 3.75 1e-06 1.7e-05
GO:0006807 nitrogen compound metabolic process 31.58% (18/57) 1.82 1e-06 1.9e-05
GO:0008152 metabolic process 40.35% (23/57) 1.49 1e-06 1.9e-05
GO:0016853 isomerase activity 8.77% (5/57) 4.77 1e-06 1.9e-05
GO:0009982 pseudouridine synthase activity 5.26% (3/57) 7.12 1e-06 2e-05
GO:0001522 pseudouridine synthesis 5.26% (3/57) 6.87 2e-06 2.9e-05
GO:0016866 intramolecular transferase activity 5.26% (3/57) 6.42 6e-06 7.3e-05
GO:0016874 ligase activity 7.02% (4/57) 4.78 1.4e-05 0.000169
GO:0009451 RNA modification 5.26% (3/57) 5.79 2.2e-05 0.000237
GO:0071704 organic substance metabolic process 31.58% (18/57) 1.53 2.2e-05 0.000243
GO:0097159 organic cyclic compound binding 31.58% (18/57) 1.45 4.7e-05 0.000428
GO:1901363 heterocyclic compound binding 31.58% (18/57) 1.45 4.7e-05 0.000428
GO:0018130 heterocycle biosynthetic process 8.77% (5/57) 3.69 4.3e-05 0.000443
GO:0019438 aromatic compound biosynthetic process 8.77% (5/57) 3.68 4.6e-05 0.000447
GO:0044238 primary metabolic process 29.82% (17/57) 1.49 5.5e-05 0.000485
GO:0043039 tRNA aminoacylation 5.26% (3/57) 5.23 7.2e-05 0.00049
GO:0004812 aminoacyl-tRNA ligase activity 5.26% (3/57) 5.23 7.2e-05 0.00049
GO:0016875 ligase activity, forming carbon-oxygen bonds 5.26% (3/57) 5.23 7.2e-05 0.00049
GO:0043038 amino acid activation 5.26% (3/57) 5.23 7.2e-05 0.00049
GO:1901362 organic cyclic compound biosynthetic process 8.77% (5/57) 3.53 7.5e-05 0.000496
GO:0008150 biological_process 43.86% (25/57) 1.09 5.9e-05 0.000501
GO:0006418 tRNA aminoacylation for protein translation 5.26% (3/57) 5.31 6.2e-05 0.000503
GO:0009058 biosynthetic process 14.04% (8/57) 2.54 6.4e-05 0.000506
GO:0003674 molecular_function 57.89% (33/57) 0.83 7.1e-05 0.000543
GO:0003824 catalytic activity 38.6% (22/57) 1.15 0.00012 0.000757
GO:0003676 nucleic acid binding 17.54% (10/57) 2.06 0.000118 0.00076
GO:0044249 cellular biosynthetic process 12.28% (7/57) 2.58 0.000166 0.001016
GO:0005488 binding 40.35% (23/57) 1.07 0.000178 0.001064
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 5.26% (3/57) 4.76 0.000192 0.00112
GO:1901576 organic substance biosynthetic process 12.28% (7/57) 2.5 0.000226 0.001285
GO:0140101 catalytic activity, acting on a tRNA 5.26% (3/57) 4.59 0.00027 0.001501
GO:0006399 tRNA metabolic process 5.26% (3/57) 4.43 0.000376 0.002046
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 5.26% (3/57) 4.39 0.000409 0.002177
GO:0050662 coenzyme binding 7.02% (4/57) 3.39 0.000592 0.003022
GO:0140098 catalytic activity, acting on RNA 7.02% (4/57) 3.39 0.000592 0.003022
GO:0003723 RNA binding 7.02% (4/57) 3.37 0.000624 0.003119
GO:1901566 organonitrogen compound biosynthetic process 8.77% (5/57) 2.83 0.000689 0.003378
GO:0034660 ncRNA metabolic process 5.26% (3/57) 4.11 0.000724 0.003479
GO:0036094 small molecule binding 19.3% (11/57) 1.58 0.000924 0.004356
GO:1990837 sequence-specific double-stranded DNA binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0001067 regulatory region nucleic acid binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0001012 RNA polymerase II regulatory region DNA binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0000976 transcription regulatory region sequence-specific DNA binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0032422 purine-rich negative regulatory element binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0044212 transcription regulatory region DNA binding 1.75% (1/57) 9.53 0.001351 0.004868
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0047661 amino-acid racemase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0008837 diaminopimelate epimerase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0004399 histidinol dehydrogenase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0003937 IMP cyclohydrolase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0009235 cobalamin metabolic process 1.75% (1/57) 9.53 0.001351 0.004868
GO:0009236 cobalamin biosynthetic process 1.75% (1/57) 9.53 0.001351 0.004868
GO:0016852 sirohydrochlorin cobaltochelatase activity 1.75% (1/57) 9.53 0.001351 0.004868
GO:0055086 nucleobase-containing small molecule metabolic process 5.26% (3/57) 3.88 0.001141 0.005276
GO:0044283 small molecule biosynthetic process 5.26% (3/57) 3.7 0.00163 0.005788
GO:0050661 NADP binding 3.51% (2/57) 5.01 0.001787 0.006165
GO:1901607 alpha-amino acid biosynthetic process 3.51% (2/57) 5.01 0.001787 0.006165
GO:0016597 amino acid binding 1.75% (1/57) 8.53 0.0027 0.008168
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.75% (1/57) 8.53 0.0027 0.008168
GO:0004637 phosphoribosylamine-glycine ligase activity 1.75% (1/57) 8.53 0.0027 0.008168
GO:0016743 carboxyl- or carbamoyltransferase activity 1.75% (1/57) 8.53 0.0027 0.008168
GO:0006144 purine nucleobase metabolic process 1.75% (1/57) 8.53 0.0027 0.008168
GO:0036361 racemase activity, acting on amino acids and derivatives 1.75% (1/57) 8.53 0.0027 0.008168
GO:0009113 purine nucleobase biosynthetic process 1.75% (1/57) 8.53 0.0027 0.008168
GO:0004832 valine-tRNA ligase activity 1.75% (1/57) 8.53 0.0027 0.008168
GO:0019238 cyclohydrolase activity 1.75% (1/57) 8.53 0.0027 0.008168
GO:0006438 valyl-tRNA aminoacylation 1.75% (1/57) 8.53 0.0027 0.008168
GO:0008652 cellular amino acid biosynthetic process 3.51% (2/57) 4.65 0.00292 0.008726
GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor 1.75% (1/57) 7.95 0.004048 0.011667
GO:0004784 superoxide dismutase activity 1.75% (1/57) 7.95 0.004048 0.011667
GO:1901605 alpha-amino acid metabolic process 3.51% (2/57) 4.42 0.00397 0.011718
GO:0016741 transferase activity, transferring one-carbon groups 5.26% (3/57) 3.17 0.004595 0.013091
GO:0016854 racemase and epimerase activity 1.75% (1/57) 7.53 0.005393 0.014682
GO:0009112 nucleobase metabolic process 1.75% (1/57) 7.53 0.005393 0.014682
GO:0046112 nucleobase biosynthetic process 1.75% (1/57) 7.53 0.005393 0.014682
GO:0004749 ribose phosphate diphosphokinase activity 1.75% (1/57) 7.53 0.005393 0.014682
GO:0072522 purine-containing compound biosynthetic process 3.51% (2/57) 4.09 0.006233 0.016781
GO:0043177 organic acid binding 1.75% (1/57) 7.21 0.006737 0.016844
GO:0031406 carboxylic acid binding 1.75% (1/57) 7.21 0.006737 0.016844
GO:0004345 glucose-6-phosphate dehydrogenase activity 1.75% (1/57) 7.21 0.006737 0.016844
GO:0009085 lysine biosynthetic process 1.75% (1/57) 7.21 0.006737 0.016844
GO:0009089 lysine biosynthetic process via diaminopimelate 1.75% (1/57) 7.21 0.006737 0.016844
GO:0046451 diaminopimelate metabolic process 1.75% (1/57) 7.21 0.006737 0.016844
GO:0006553 lysine metabolic process 1.75% (1/57) 7.21 0.006737 0.016844
GO:0000105 histidine biosynthetic process 1.75% (1/57) 6.95 0.00808 0.019033
GO:0046148 pigment biosynthetic process 1.75% (1/57) 6.95 0.00808 0.019033
GO:0052803 imidazole-containing compound metabolic process 1.75% (1/57) 6.95 0.00808 0.019033
GO:0006547 histidine metabolic process 1.75% (1/57) 6.95 0.00808 0.019033
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 1.75% (1/57) 6.95 0.00808 0.019033
GO:1901265 nucleoside phosphate binding 15.79% (9/57) 1.34 0.008238 0.01904
GO:0000166 nucleotide binding 15.79% (9/57) 1.34 0.008238 0.01904
GO:0044271 cellular nitrogen compound biosynthetic process 7.02% (4/57) 2.32 0.008381 0.01919
GO:0009165 nucleotide biosynthetic process 3.51% (2/57) 3.85 0.008632 0.019402
GO:1901293 nucleoside phosphate biosynthetic process 3.51% (2/57) 3.85 0.008632 0.019402
GO:0055114 oxidation-reduction process 10.53% (6/57) 1.78 0.007854 0.019436
GO:0003747 translation release factor activity 1.75% (1/57) 6.72 0.00942 0.020068
GO:0008079 translation termination factor activity 1.75% (1/57) 6.72 0.00942 0.020068
GO:0043624 cellular protein complex disassembly 1.75% (1/57) 6.72 0.00942 0.020068
GO:0006415 translational termination 1.75% (1/57) 6.72 0.00942 0.020068
GO:0032984 protein-containing complex disassembly 1.75% (1/57) 6.72 0.00942 0.020068
GO:0022411 cellular component disassembly 1.75% (1/57) 6.72 0.00942 0.020068
GO:0072521 purine-containing compound metabolic process 3.51% (2/57) 3.76 0.009622 0.020323
GO:0140097 catalytic activity, acting on DNA 3.51% (2/57) 3.75 0.009792 0.020505
GO:0043648 dicarboxylic acid metabolic process 1.75% (1/57) 6.53 0.010758 0.021257
GO:0006801 superoxide metabolic process 1.75% (1/57) 6.53 0.010758 0.021257
GO:0072593 reactive oxygen species metabolic process 1.75% (1/57) 6.53 0.010758 0.021257
GO:0016778 diphosphotransferase activity 1.75% (1/57) 6.53 0.010758 0.021257
GO:0016742 hydroxymethyl-, formyl- and related transferase activity 1.75% (1/57) 6.53 0.010758 0.021257
GO:0042440 pigment metabolic process 1.75% (1/57) 6.53 0.010758 0.021257
GO:1901564 organonitrogen compound metabolic process 17.54% (10/57) 1.2 0.010283 0.021351
GO:0006265 DNA topological change 1.75% (1/57) 6.36 0.012095 0.023518
GO:0003916 DNA topoisomerase activity 1.75% (1/57) 6.36 0.012095 0.023518
GO:0009117 nucleotide metabolic process 3.51% (2/57) 3.53 0.013072 0.025218
GO:0071103 DNA conformation change 1.75% (1/57) 6.21 0.01343 0.025311
GO:0009067 aspartate family amino acid biosynthetic process 1.75% (1/57) 6.21 0.01343 0.025311
GO:0003887 DNA-directed DNA polymerase activity 1.75% (1/57) 6.21 0.01343 0.025311
GO:0006753 nucleoside phosphate metabolic process 3.51% (2/57) 3.5 0.013659 0.025546
GO:0005694 chromosome 1.75% (1/57) 6.07 0.014763 0.027196
GO:0009066 aspartate family amino acid metabolic process 1.75% (1/57) 6.07 0.014763 0.027196
GO:0034061 DNA polymerase activity 1.75% (1/57) 5.95 0.016095 0.029427
GO:0090407 organophosphate biosynthetic process 3.51% (2/57) 3.36 0.016333 0.029642
GO:0009110 vitamin biosynthetic process 1.75% (1/57) 5.83 0.017425 0.030064
GO:0042364 water-soluble vitamin biosynthetic process 1.75% (1/57) 5.83 0.017425 0.030064
GO:0006006 glucose metabolic process 1.75% (1/57) 5.83 0.017425 0.030064
GO:0006766 vitamin metabolic process 1.75% (1/57) 5.83 0.017425 0.030064
GO:0006767 water-soluble vitamin metabolic process 1.75% (1/57) 5.83 0.017425 0.030064
GO:0046394 carboxylic acid biosynthetic process 3.51% (2/57) 3.33 0.016979 0.030365
GO:0016053 organic acid biosynthetic process 3.51% (2/57) 3.33 0.016979 0.030365
GO:0043167 ion binding 19.3% (11/57) 1.0 0.018852 0.032298
GO:0033014 tetrapyrrole biosynthetic process 1.75% (1/57) 5.62 0.020079 0.034162
GO:0008408 3'-5' exonuclease activity 1.75% (1/57) 5.53 0.021403 0.036164
GO:0033013 tetrapyrrole metabolic process 1.75% (1/57) 5.44 0.022726 0.037876
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.75% (1/57) 5.44 0.022726 0.037876
GO:0032561 guanyl ribonucleotide binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0032549 ribonucleoside binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0005525 GTP binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0001883 purine nucleoside binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0032550 purine ribonucleoside binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0001882 nucleoside binding 3.51% (2/57) 3.04 0.02478 0.039423
GO:0005096 GTPase activator activity 1.75% (1/57) 5.36 0.024047 0.039807
GO:0019318 hexose metabolic process 1.75% (1/57) 5.28 0.025366 0.039837
GO:0008173 RNA methyltransferase activity 1.75% (1/57) 5.28 0.025366 0.039837
GO:0019001 guanyl nucleotide binding 3.51% (2/57) 2.99 0.026329 0.041087
GO:0019867 outer membrane 1.75% (1/57) 5.21 0.026683 0.041376
GO:0043168 anion binding 14.04% (8/57) 1.14 0.027651 0.042607
GO:0004527 exonuclease activity 1.75% (1/57) 5.14 0.027999 0.042873
GO:0031966 mitochondrial membrane 1.75% (1/57) 5.07 0.029313 0.044606
GO:0019637 organophosphate metabolic process 3.51% (2/57) 2.85 0.031766 0.04804
GO:0006259 DNA metabolic process 3.51% (2/57) 2.82 0.032616 0.049024
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.119 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_176 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_214 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_247 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_211 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_225 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_246 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_105 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_133 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.03 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_276 0.04 Archaeplastida Compare
Gingko biloba HCCA Cluster_337 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.039 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_73 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_180 0.086 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_205 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_232 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_294 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.045 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_83 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.043 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_150 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.049 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.045 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_341 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_408 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_469 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_516 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_172 0.02 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_166 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_219 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.076 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_125 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_160 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.032 Archaeplastida Compare
Vitis vinifera HCCA Cluster_52 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_155 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.049 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.037 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.034 Archaeplastida Compare
Sequences (57) (download table)

InterPro Domains

GO Terms

Family Terms