Coexpression cluster: Cluster_33 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 10.42% (15/144) 4.72 0.0 0.0
GO:0043436 oxoacid metabolic process 10.42% (15/144) 3.94 0.0 0.0
GO:0006082 organic acid metabolic process 10.42% (15/144) 3.94 0.0 0.0
GO:0019752 carboxylic acid metabolic process 10.42% (15/144) 3.96 0.0 0.0
GO:0043038 amino acid activation 6.25% (9/144) 5.21 0.0 0.0
GO:0043039 tRNA aminoacylation 6.25% (9/144) 5.21 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.25% (9/144) 5.16 0.0 0.0
GO:0004812 aminoacyl-tRNA ligase activity 6.25% (9/144) 5.16 0.0 0.0
GO:0006418 tRNA aminoacylation for protein translation 5.56% (8/144) 5.42 0.0 0.0
GO:0016874 ligase activity 6.94% (10/144) 4.12 0.0 0.0
GO:0140101 catalytic activity, acting on a tRNA 6.25% (9/144) 4.41 0.0 0.0
GO:0006399 tRNA metabolic process 6.25% (9/144) 4.21 0.0 0.0
GO:0044281 small molecule metabolic process 11.11% (16/144) 2.64 0.0 0.0
GO:0034660 ncRNA metabolic process 6.25% (9/144) 3.79 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 6.94% (10/144) 3.53 0.0 0.0
GO:0016070 RNA metabolic process 8.33% (12/144) 2.82 0.0 3e-06
GO:0008652 cellular amino acid biosynthetic process 3.47% (5/144) 4.46 3e-06 5.1e-05
GO:0005488 binding 30.56% (44/144) 0.96 5e-06 9e-05
GO:0090304 nucleic acid metabolic process 8.33% (12/144) 2.22 1.1e-05 0.000148
GO:0003674 molecular_function 44.44% (64/144) 0.69 1.1e-05 0.000149
GO:0000105 histidine biosynthetic process 2.08% (3/144) 5.94 1e-05 0.000153
GO:0006547 histidine metabolic process 2.08% (3/144) 5.94 1e-05 0.000153
GO:0052803 imidazole-containing compound metabolic process 2.08% (3/144) 5.94 1e-05 0.000153
GO:0034641 cellular nitrogen compound metabolic process 12.5% (18/144) 1.69 1.2e-05 0.000156
GO:0006725 cellular aromatic compound metabolic process 11.11% (16/144) 1.82 1.3e-05 0.000158
GO:0046483 heterocycle metabolic process 11.11% (16/144) 1.81 1.3e-05 0.000159
GO:1901360 organic cyclic compound metabolic process 11.11% (16/144) 1.78 1.8e-05 0.000203
GO:0097159 organic cyclic compound binding 20.83% (30/144) 1.16 2.2e-05 0.000235
GO:1901363 heterocyclic compound binding 20.83% (30/144) 1.16 2.2e-05 0.000235
GO:0009987 cellular process 22.92% (33/144) 1.07 2.6e-05 0.000276
GO:0008152 metabolic process 25.69% (37/144) 0.95 5e-05 0.000507
GO:0044237 cellular metabolic process 20.14% (29/144) 1.1 6.5e-05 0.000635
GO:0008150 biological_process 31.25% (45/144) 0.8 7.2e-05 0.000684
GO:0009073 aromatic amino acid family biosynthetic process 2.08% (3/144) 5.07 8.2e-05 0.000758
GO:0046394 carboxylic acid biosynthetic process 3.47% (5/144) 3.38 0.000116 0.001005
GO:0016053 organic acid biosynthetic process 3.47% (5/144) 3.38 0.000116 0.001005
GO:0009072 aromatic amino acid family metabolic process 2.08% (3/144) 4.72 0.000179 0.00151
GO:0003747 translation release factor activity 1.39% (2/144) 6.36 0.000195 0.001567
GO:0008079 translation termination factor activity 1.39% (2/144) 6.36 0.000195 0.001567
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.78% (4/144) 3.7 0.000248 0.00194
GO:1901564 organonitrogen compound metabolic process 15.28% (22/144) 1.17 0.000284 0.002065
GO:0006139 nucleobase-containing compound metabolic process 9.03% (13/144) 1.65 0.000279 0.002076
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors 2.78% (4/144) 3.66 0.000275 0.002096
GO:0043624 cellular protein complex disassembly 1.39% (2/144) 5.94 0.000388 0.002533
GO:0032984 protein-containing complex disassembly 1.39% (2/144) 5.94 0.000388 0.002533
GO:0022411 cellular component disassembly 1.39% (2/144) 5.94 0.000388 0.002533
GO:0006415 translational termination 1.39% (2/144) 5.94 0.000388 0.002533
GO:0043167 ion binding 16.67% (24/144) 1.08 0.000363 0.002582
GO:0071704 organic substance metabolic process 20.14% (29/144) 0.94 0.000439 0.002804
GO:0044238 primary metabolic process 19.44% (28/144) 0.95 0.000511 0.003196
GO:1901607 alpha-amino acid biosynthetic process 2.08% (3/144) 4.14 0.000626 0.00384
GO:0044283 small molecule biosynthetic process 3.47% (5/144) 2.79 0.000789 0.004751
GO:1901566 organonitrogen compound biosynthetic process 5.56% (8/144) 2.03 0.000818 0.004828
GO:0003824 catalytic activity 25.0% (36/144) 0.73 0.001162 0.006737
GO:1901605 alpha-amino acid metabolic process 2.08% (3/144) 3.83 0.001187 0.006758
GO:0006807 nitrogen compound metabolic process 17.36% (25/144) 0.92 0.001431 0.007999
GO:0009058 biosynthetic process 8.33% (12/144) 1.42 0.001801 0.009889
GO:0043168 anion binding 12.5% (18/144) 1.1 0.001841 0.009935
GO:0036094 small molecule binding 12.5% (18/144) 1.04 0.002775 0.01472
GO:0032553 ribonucleotide binding 11.11% (16/144) 1.07 0.004043 0.021093
GO:0005737 cytoplasm 2.08% (3/144) 3.21 0.004154 0.021313
GO:0097367 carbohydrate derivative binding 11.11% (16/144) 1.06 0.004255 0.021479
GO:0044249 cellular biosynthetic process 6.94% (10/144) 1.34 0.006539 0.032485
GO:0003723 RNA binding 3.47% (5/144) 2.07 0.006991 0.034191
GO:0035639 purine ribonucleoside triphosphate binding 10.42% (15/144) 1.0 0.008225 0.034788
GO:0004366 glycerol-3-phosphate O-acyltransferase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0004764 shikimate 3-dehydrogenase (NADP+) activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0004820 glycine-tRNA ligase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0006426 glycyl-tRNA aminoacylation 0.69% (1/144) 6.94 0.008117 0.034802
GO:0004455 ketol-acid reductoisomerase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor 0.69% (1/144) 6.94 0.008117 0.034802
GO:0003879 ATP phosphoribosyltransferase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 0.69% (1/144) 6.94 0.008117 0.034802
GO:0032555 purine ribonucleotide binding 10.42% (15/144) 0.99 0.00854 0.03517
GO:1901576 organic substance biosynthetic process 6.94% (10/144) 1.28 0.008448 0.035255
GO:1901265 nucleoside phosphate binding 11.11% (16/144) 0.94 0.008985 0.0356
GO:0000166 nucleotide binding 11.11% (16/144) 0.94 0.008985 0.0356
GO:0017076 purine nucleotide binding 10.42% (15/144) 0.99 0.008782 0.035699
GO:0008144 drug binding 9.72% (14/144) 1.0 0.010641 0.041121
GO:0008168 methyltransferase activity 2.78% (4/144) 2.23 0.010575 0.041374
GO:0008135 translation factor activity, RNA binding 1.39% (2/144) 3.55 0.012419 0.047404
GO:0030247 polysaccharide binding 1.39% (2/144) 3.49 0.013589 0.049457
GO:0001871 pattern binding 1.39% (2/144) 3.49 0.013589 0.049457
GO:2001070 starch binding 1.39% (2/144) 3.49 0.013589 0.049457
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_17 0.038 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_34 0.024 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_151 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.086 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_186 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.046 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.041 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_264 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_70 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_95 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.026 Archaeplastida Compare
Gingko biloba HCCA Cluster_111 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_245 0.041 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_39 0.043 Archaeplastida Compare
Zea mays HCCA Cluster_70 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.045 Archaeplastida Compare
Zea mays HCCA Cluster_208 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_268 0.041 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.019 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_41 0.029 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.087 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_114 0.043 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.04 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.062 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.024 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.043 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_160 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_170 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.042 Archaeplastida Compare
Picea abies HCCA Cluster_227 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_266 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.048 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_63 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.045 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_248 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_256 0.039 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_100 0.029 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_140 0.035 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_178 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_32 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_125 0.034 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.054 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_219 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.045 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_253 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_72 0.046 Archaeplastida Compare
Vitis vinifera HCCA Cluster_93 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_158 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.039 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.05 Archaeplastida Compare
Vitis vinifera HCCA Cluster_201 0.037 Archaeplastida Compare
Sequences (144) (download table)

InterPro Domains

GO Terms

Family Terms