Coexpression cluster: Cluster_93 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044436 thylakoid part 4.62% (6/130) 4.72 0.0 3.5e-05
GO:0009654 photosystem II oxygen evolving complex 3.08% (4/130) 5.58 1e-06 0.000217
GO:1990204 oxidoreductase complex 3.08% (4/130) 5.34 3e-06 0.000291
GO:0034654 nucleobase-containing compound biosynthetic process 6.15% (8/130) 3.14 4e-06 0.000323
GO:0006352 DNA-templated transcription, initiation 3.08% (4/130) 4.8 1.2e-05 0.000826
GO:0019438 aromatic compound biosynthetic process 6.15% (8/130) 2.85 1.7e-05 0.000935
GO:0018130 heterocycle biosynthetic process 6.15% (8/130) 2.81 2e-05 0.000969
GO:0019898 extrinsic component of membrane 2.31% (3/130) 5.44 4.1e-05 0.001157
GO:0009521 photosystem 3.08% (4/130) 4.38 4.1e-05 0.001251
GO:1901362 organic cyclic compound biosynthetic process 6.15% (8/130) 2.67 4.1e-05 0.001371
GO:0015979 photosynthesis 3.08% (4/130) 4.42 3.7e-05 0.001378
GO:0098796 membrane protein complex 4.62% (6/130) 3.17 5.7e-05 0.001492
GO:0019693 ribose phosphate metabolic process 3.85% (5/130) 3.76 3.5e-05 0.001497
GO:0009167 purine ribonucleoside monophosphate metabolic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0046390 ribose phosphate biosynthetic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009126 purine nucleoside monophosphate metabolic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009161 ribonucleoside monophosphate metabolic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009123 nucleoside monophosphate metabolic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009152 purine ribonucleotide biosynthetic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009260 ribonucleotide biosynthetic process 3.08% (4/130) 3.78 0.000209 0.002075
GO:0009205 purine ribonucleoside triphosphate metabolic process 3.08% (4/130) 3.86 0.00017 0.002133
GO:0009199 ribonucleoside triphosphate metabolic process 3.08% (4/130) 3.86 0.00017 0.002133
GO:0009144 purine nucleoside triphosphate metabolic process 3.08% (4/130) 3.86 0.00017 0.002133
GO:0009141 nucleoside triphosphate metabolic process 3.08% (4/130) 3.76 0.000223 0.002152
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 3.08% (4/130) 3.99 0.000118 0.002219
GO:0009145 purine nucleoside triphosphate biosynthetic process 3.08% (4/130) 3.99 0.000118 0.002219
GO:0009201 ribonucleoside triphosphate biosynthetic process 3.08% (4/130) 3.99 0.000118 0.002219
GO:0009142 nucleoside triphosphate biosynthetic process 3.08% (4/130) 3.99 0.000118 0.002219
GO:0006754 ATP biosynthetic process 3.08% (4/130) 3.99 0.000118 0.002219
GO:0006164 purine nucleotide biosynthetic process 3.08% (4/130) 3.73 0.000238 0.00223
GO:0009156 ribonucleoside monophosphate biosynthetic process 3.08% (4/130) 3.88 0.000159 0.002237
GO:0046034 ATP metabolic process 3.08% (4/130) 3.88 0.000159 0.002237
GO:0009124 nucleoside monophosphate biosynthetic process 3.08% (4/130) 3.88 0.000159 0.002237
GO:0009127 purine nucleoside monophosphate biosynthetic process 3.08% (4/130) 3.88 0.000159 0.002237
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 3.08% (4/130) 3.88 0.000159 0.002237
GO:0072522 purine-containing compound biosynthetic process 3.08% (4/130) 3.71 0.000253 0.002311
GO:0009523 photosystem II 2.31% (3/130) 4.86 0.000146 0.002603
GO:1901135 carbohydrate derivative metabolic process 3.85% (5/130) 3.07 0.000341 0.00303
GO:0009165 nucleotide biosynthetic process 3.08% (4/130) 3.51 0.000426 0.003427
GO:0009150 purine ribonucleotide metabolic process 3.08% (4/130) 3.51 0.000426 0.003427
GO:0009259 ribonucleotide metabolic process 3.08% (4/130) 3.51 0.000426 0.003427
GO:1901293 nucleoside phosphate biosynthetic process 3.08% (4/130) 3.51 0.000426 0.003427
GO:0006163 purine nucleotide metabolic process 3.08% (4/130) 3.47 0.000473 0.003721
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism 1.54% (2/130) 5.86 0.000499 0.00375
GO:0072521 purine-containing compound metabolic process 3.08% (4/130) 3.45 0.000499 0.00383
GO:1901137 carbohydrate derivative biosynthetic process 3.08% (4/130) 3.43 0.000525 0.003855
GO:0009064 glutamine family amino acid metabolic process 1.54% (2/130) 5.66 0.000663 0.004672
GO:0009084 glutamine family amino acid biosynthetic process 1.54% (2/130) 5.66 0.000663 0.004672
GO:0019637 organophosphate metabolic process 3.85% (5/130) 2.85 0.000685 0.004724
GO:0044249 cellular biosynthetic process 8.46% (11/130) 1.66 0.000752 0.005081
GO:0009117 nucleotide metabolic process 3.08% (4/130) 3.24 0.000879 0.005826
GO:0006753 nucleoside phosphate metabolic process 3.08% (4/130) 3.17 0.001042 0.006772
GO:0009058 biosynthetic process 9.23% (12/130) 1.5 0.001133 0.007091
GO:1902494 catalytic complex 3.08% (4/130) 3.14 0.001131 0.007211
GO:1901576 organic substance biosynthetic process 8.46% (11/130) 1.58 0.0012 0.007374
GO:0019829 cation-transporting ATPase activity 1.54% (2/130) 5.2 0.001291 0.007394
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism 1.54% (2/130) 5.2 0.001291 0.007394
GO:0042625 ATPase coupled ion transmembrane transporter activity 1.54% (2/130) 5.2 0.001291 0.007394
GO:0022853 active ion transmembrane transporter activity 1.54% (2/130) 5.2 0.001291 0.007394
GO:0051540 metal cluster binding 2.31% (3/130) 3.79 0.001341 0.007431
GO:0051536 iron-sulfur cluster binding 2.31% (3/130) 3.79 0.001341 0.007431
GO:0044271 cellular nitrogen compound biosynthetic process 6.15% (8/130) 1.9 0.001459 0.007952
GO:0017144 drug metabolic process 3.08% (4/130) 3.0 0.001597 0.008568
GO:0090407 organophosphate biosynthetic process 3.08% (4/130) 2.96 0.001778 0.009391
GO:0032774 RNA biosynthetic process 3.08% (4/130) 2.92 0.001973 0.010105
GO:0055086 nucleobase-containing small molecule metabolic process 3.08% (4/130) 2.92 0.001973 0.010105
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 1.54% (2/130) 4.86 0.002115 0.010669
GO:0015985 energy coupled proton transport, down electrochemical gradient 1.54% (2/130) 4.76 0.002432 0.011915
GO:0015986 ATP synthesis coupled proton transport 1.54% (2/130) 4.76 0.002432 0.011915
GO:0016053 organic acid biosynthetic process 3.08% (4/130) 2.8 0.002646 0.012597
GO:0046394 carboxylic acid biosynthetic process 3.08% (4/130) 2.8 0.002646 0.012597
GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors 1.54% (2/130) 4.34 0.004331 0.020332
GO:0043467 regulation of generation of precursor metabolites and energy 0.77% (1/130) 7.66 0.004934 0.02059
GO:0042549 photosystem II stabilization 0.77% (1/130) 7.66 0.004934 0.02059
GO:0042548 regulation of photosynthesis, light reaction 0.77% (1/130) 7.66 0.004934 0.02059
GO:0010242 oxygen evolving activity 0.77% (1/130) 7.66 0.004934 0.02059
GO:0010109 regulation of photosynthesis 0.77% (1/130) 7.66 0.004934 0.02059
GO:0006537 glutamate biosynthetic process 0.77% (1/130) 7.66 0.004934 0.02059
GO:0046422 violaxanthin de-epoxidase activity 0.77% (1/130) 7.66 0.004934 0.02059
GO:0006536 glutamate metabolic process 0.77% (1/130) 7.66 0.004934 0.02059
GO:0043650 dicarboxylic acid biosynthetic process 0.77% (1/130) 7.66 0.004934 0.02059
GO:0006139 nucleobase-containing compound metabolic process 6.15% (8/130) 1.59 0.005318 0.021919
GO:0044283 small molecule biosynthetic process 3.08% (4/130) 2.51 0.00544 0.022153
GO:0044281 small molecule metabolic process 4.62% (6/130) 1.8 0.007723 0.031075
GO:0006725 cellular aromatic compound metabolic process 6.15% (8/130) 1.44 0.009859 0.037441
GO:0004751 ribose-5-phosphate isomerase activity 0.77% (1/130) 6.66 0.009845 0.037812
GO:0015930 glutamate synthase activity 0.77% (1/130) 6.66 0.009845 0.037812
GO:0009052 pentose-phosphate shunt, non-oxidative branch 0.77% (1/130) 6.66 0.009845 0.037812
GO:1901566 organonitrogen compound biosynthetic process 4.62% (6/130) 1.72 0.010254 0.03851
GO:0046483 heterocycle metabolic process 6.15% (8/130) 1.44 0.009766 0.038836
GO:1901607 alpha-amino acid biosynthetic process 1.54% (2/130) 3.62 0.011543 0.041952
GO:0042626 ATPase activity, coupled to transmembrane movement of substances 1.54% (2/130) 3.62 0.011543 0.041952
GO:0043492 ATPase activity, coupled to movement of substances 1.54% (2/130) 3.62 0.011543 0.041952
GO:1901360 organic cyclic compound metabolic process 6.15% (8/130) 1.39 0.011737 0.042203
GO:0006757 ATP generation from ADP 1.54% (2/130) 3.49 0.013641 0.043498
GO:0006096 glycolytic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0006165 nucleoside diphosphate phosphorylation 1.54% (2/130) 3.49 0.013641 0.043498
GO:0009132 nucleoside diphosphate metabolic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0009135 purine nucleoside diphosphate metabolic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0009185 ribonucleoside diphosphate metabolic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0046939 nucleotide phosphorylation 1.54% (2/130) 3.49 0.013641 0.043498
GO:0046031 ADP metabolic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0042866 pyruvate biosynthetic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0009179 purine ribonucleoside diphosphate metabolic process 1.54% (2/130) 3.49 0.013641 0.043498
GO:0051186 cofactor metabolic process 2.31% (3/130) 2.65 0.012356 0.043963
GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor 0.77% (1/130) 6.08 0.014731 0.044455
GO:0009496 plastoquinol--plastocyanin reductase activity 0.77% (1/130) 6.08 0.014731 0.044455
GO:0004618 phosphoglycerate kinase activity 0.77% (1/130) 6.08 0.014731 0.044455
GO:0016774 phosphotransferase activity, carboxyl group as acceptor 0.77% (1/130) 6.08 0.014731 0.044455
GO:0006090 pyruvate metabolic process 1.54% (2/130) 3.45 0.014375 0.044987
GO:0009166 nucleotide catabolic process 1.54% (2/130) 3.45 0.014375 0.044987
GO:0016491 oxidoreductase activity 9.23% (12/130) 1.05 0.013279 0.046754
GO:0019363 pyridine nucleotide biosynthetic process 1.54% (2/130) 3.34 0.016674 0.049438
GO:0019359 nicotinamide nucleotide biosynthetic process 1.54% (2/130) 3.34 0.016674 0.049438
GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity 1.54% (2/130) 3.31 0.017473 0.049631
GO:0015399 primary active transmembrane transporter activity 1.54% (2/130) 3.31 0.017473 0.049631
GO:0072525 pyridine-containing compound biosynthetic process 1.54% (2/130) 3.31 0.017473 0.049631
GO:1901292 nucleoside phosphate catabolic process 1.54% (2/130) 3.31 0.017473 0.049631
GO:1901605 alpha-amino acid metabolic process 1.54% (2/130) 3.31 0.017473 0.049631
GO:0010207 photosystem II assembly 0.77% (1/130) 5.66 0.019593 0.049792
GO:0006542 glutamine biosynthetic process 0.77% (1/130) 5.66 0.019593 0.049792
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 0.77% (1/130) 5.66 0.019593 0.049792
GO:0043648 dicarboxylic acid metabolic process 0.77% (1/130) 5.66 0.019593 0.049792
GO:0006541 glutamine metabolic process 0.77% (1/130) 5.66 0.019593 0.049792
GO:0042651 thylakoid membrane 0.77% (1/130) 5.66 0.019593 0.049792
GO:0034357 photosynthetic membrane 0.77% (1/130) 5.66 0.019593 0.049792
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_34 0.036 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_98 0.182 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_102 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_106 0.047 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_135 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_149 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_151 0.059 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_154 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_185 0.073 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_227 0.039 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_239 0.096 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_23 0.024 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_107 0.074 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_153 0.097 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_179 0.09 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_197 0.071 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_239 0.058 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_12 0.045 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_21 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_75 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_82 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_128 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_136 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_169 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_46 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_65 0.051 Archaeplastida Compare
Gingko biloba HCCA Cluster_111 0.063 Archaeplastida Compare
Gingko biloba HCCA Cluster_133 0.039 Archaeplastida Compare
Gingko biloba HCCA Cluster_135 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_250 0.13 Archaeplastida Compare
Gingko biloba HCCA Cluster_269 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_302 0.076 Archaeplastida Compare
Zea mays HCCA Cluster_3 0.106 Archaeplastida Compare
Zea mays HCCA Cluster_107 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_146 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_185 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_187 0.114 Archaeplastida Compare
Zea mays HCCA Cluster_208 0.127 Archaeplastida Compare
Zea mays HCCA Cluster_232 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_268 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_319 0.056 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_4 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_6 0.051 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_52 0.162 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_65 0.066 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_83 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_123 0.041 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_133 0.037 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_145 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.037 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_32 0.05 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_46 0.059 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_88 0.074 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_108 0.036 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_160 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_224 0.124 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_245 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_249 0.044 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.077 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_294 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_27 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_145 0.07 Archaeplastida Compare
Picea abies HCCA Cluster_227 0.118 Archaeplastida Compare
Picea abies HCCA Cluster_266 0.026 Archaeplastida Compare
Picea abies HCCA Cluster_269 0.06 Archaeplastida Compare
Picea abies HCCA Cluster_292 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_324 0.039 Archaeplastida Compare
Picea abies HCCA Cluster_343 0.023 Archaeplastida Compare
Picea abies HCCA Cluster_362 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_456 0.075 Archaeplastida Compare
Picea abies HCCA Cluster_465 0.094 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.052 Archaeplastida Compare
Oryza sativa HCCA Cluster_63 0.05 Archaeplastida Compare
Oryza sativa HCCA Cluster_90 0.043 Archaeplastida Compare
Oryza sativa HCCA Cluster_148 0.035 Archaeplastida Compare
Oryza sativa HCCA Cluster_189 0.052 Archaeplastida Compare
Oryza sativa HCCA Cluster_243 0.04 Archaeplastida Compare
Oryza sativa HCCA Cluster_248 0.031 Archaeplastida Compare
Oryza sativa HCCA Cluster_256 0.132 Archaeplastida Compare
Oryza sativa HCCA Cluster_308 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_321 0.078 Archaeplastida Compare
Oryza sativa HCCA Cluster_324 0.043 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_2 0.03 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_9 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_32 0.088 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_97 0.05 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_106 0.04 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_140 0.1 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_25 0.217 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.046 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.029 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_128 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_169 0.116 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_211 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_224 0.07 Archaeplastida Compare
Vitis vinifera HCCA Cluster_88 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_162 0.042 Archaeplastida Compare
Vitis vinifera HCCA Cluster_176 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_178 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_1 0.05 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_33 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_41 0.028 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_61 0.087 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_78 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_79 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_85 0.031 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_129 0.03 Archaeplastida Compare
Sequences (130) (download table)

InterPro Domains

GO Terms

Family Terms